MaRDMO

MaRDMO Logo by MaRDI, licensed under CC BY-NC-ND

MaRDMO is a plugin developed by TA4 designed to streamline the documentation of interdisciplinary workflows (Measure M4.1), mathematical models (Measure M4.2), and algorithms. Integrated within the Research Data Management Organiser (RDMO), it offers structured questionnaires guiding researchers through the documentation process. By fetching information from the MaRDI Portal, the MathModDB KG, the MathAlgoDB KG, and other established sources like Wikidata, MaRDMO ensures comprehensive documentation while minimizing the manual effort. Its seamless integration with RDMO enhances usability, allowing for the semi-automatic generation of documentations.

How to document a Workflow

The version of the MaRDMO Plugin used in this video is outdated. Still, it provides an idea how MaRDMO is functioning. Videos related to the current version of MaRDMO will be added soon.

Classes and Relations employed in the Workflow Documentation:

Research Workflow

Research Workflow instance of research workflow

instance of mathematically reproducible research workflow

instance of runtime reproducible research workflow

instance of result reproducible research workflow

instance of original platform reproducible research workflow

instance of cross-platform reproducible research workflow

instance of transferable research workflow

comment transferability options

problem statement problem statement

uses Mathematical Model

used by Computational Task

uses Method

used by Instrument

comment parameter

uses Algorithm

used by Software

uses Software

software version identifier software version identifier

platform Harwdare

uses Hardware

uses compiler

uses Instrument

edition number version number

serial number serial number

location location

uses Software

uses Data Set

uses Processing Step

series ordinal series ordinal

Mathematical Model

Mathematical Model instance of mathematical model

URL MathModDB ID

→ Mathematical Model described through MathModDB Ontology

Method

Method instance of method

Algorithm

Algorithm instance of algorithm

URL MathAlgoDB ID

→ Algorithm described through MathAlgoDB Ontology

Instrument

Instrument instance of research tool

Hardware

Hardware instance of computer hardware

CPU CPU

has part(s) compute node

quantity number of nodes

number of processor cores number of cores

Software

Software instance of software

DOI DOI

swMATH work ID swMATH work ID

URL URL

programmed in programming language

depends on software dependencies

source code repository source code repository

user manual URL user manual

Data Set

Data Set instance of data set

instance of binary data

instance of text data

instance of proprietary information

instance of open data

data size data size

number of records number of records

uses data type

object has role data type

mandates data publishing

mandates research data archiving

uses representation format

object has role representation format

file extension file extension

How to document an Algorithm

To document algorithms MaRDMO employs the MathAlgoDB ontology.

How to document a mathematical Model

To document mathematical models MaRDMO employs the MathModDB ontology.

Publications related to MaRDMO

Reidelbach, M., Ferrer. E and Weber M., 2023. MaRDMO Plugin - Document and Retrieve Workflows Using the MaRDI Portal. In Proceedings of the Conference on Research Data Infrastructure (Vol. 1). https://doi.org/10.52825/cordi.v1i.254

Reidelbach, M., Schembera, B., Weber, M. (2024). Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. In: Buzzard, K., Dickenstein, A., Eick, B., Leykin, A., Ren, Y. (eds) Mathematical Software – ICMS 2024. ICMS 2024. Lecture Notes in Computer Science, vol 14749. Springer, Cham. https://doi.org/10.1007/978-3-031-64529-7_27

Talks related to MaRDMO

Reidelbach, M., 29.03.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ 9th RDMO Community Meeting, Online.

Reidelbach, M., 17.04.2023. MaRDMO - An RDMO plugin to document and query MSO Workflows using the MaRDI Knowledge Graph. Talk @ Leibniz MMS Days, Potsdam. https://doi.org/10.5446/62069

Reidelbach, M., 26.05.2023. MaRDMO - An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ Meeting of 'Data Management Planning' working group of NFDI Section Common Infrastructures, Online.

Reidelbach, M., 29.06.2023. MaRDMO - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Workshop @ NFDI-MATWREK Conference, Siegburg.

Reidelbach, M., 25.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ MaRDI Mini-Symposium in DMV, Illmenau.

Weber, M., 26.09.2023. MaRDMO – An RDMO plugin to populate and query the MaRDI Knowledge Graph. Talk @ KLAIM, Kaiserslautern.

Reidelbach, M., 27.09.2023. MaRDMO Plugin - Document and Retrieve Interdisciplinary Workflows Using the MaRDI Portal. Talk @ NFDI4Ing Conference, Online. https://doi.org/10.5281/zenodo.8388577

Reidelbach, M., 10.10.2023. MaRDMO – Document and Query Interdisciplinary Workflows Using the MaRDI Portal. Talk @ "Maths meets Information Specialists" Workshop, Leipzig.

Reidelbach, M., 12.03.2024. Mathematical Research Data Initiative - Vision and Services. Talk @ Math+ Conference "Interpretations, Explanations, and Knowledge Gain", Berlin.

Reidelbach, M., 24.07.2024. Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. Talk @ ICMS 2024, Durham, England.

Reidelbach, M., 18.10.2024. Towards a FAIR Documentation of Workflows and Models in Applied Mathematics. Talk @ Physical Sciences in the NFDI, Online.

Reidelbach, M., 11.02.2025. No Data without... Reuse. Talk @ No Data Without... Excellence: A Coffee Lecture Series organized by the Excellence Clusters NeuroCure, UniSysCat, Matters Of Activity and Math+, Online.

Useful Links

Research Data Management Organiser: General Information & Documentation

MaRDMO: Export Plugin & Questionnaire