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brca_tcga_pyg_dataset - MaRDI portal

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brca_tcga_pyg_dataset

From MaRDI portal
Brca tcga pyg dataset



DOI10.5281/ZENODO.8251328Zenodo8251328MaRDI QIDQ6674617

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 19 July 2023

Copyright license: No records found.



Description

This is a dataset that was generated by integrating the breast cancer (BRCA TCGA) dataset from the cBioPortal (cbioportal.org) and a biological network for node connections from Pathway Commons (www.pathwaycommons.org). Data was preprocessed to form one dataset that could be converted to PyTorch Geometric data objects. This data was retrieved in the CSV format, then processed to form a graph-based dataset for use with Graph Neural Networks (GNN). The dataset contains the gene features of each patient and the overall survival time (in months) of each patient, which are the labels.






This page was built for dataset: brca_tcga_pyg_dataset

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