Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372
LieberInstitute/spatial_DG_lifespan: v1.0.0 - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of MediaWiki\Skin\BaseTemplate::getPersonalTools was deprecated in 1.46 Call $this->getSkin()->getPersonalToolsForMakeListItem instead (T422975). [Called from Skins\Chameleon\Components\NavbarHorizontal\PersonalTools::getHtml in /var/www/html/w/skins/chameleon/src/Components/NavbarHorizontal/PersonalTools.php at line 66] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

LieberInstitute/spatial_DG_lifespan: v1.0.0

From MaRDI portal
LieberInstitute/spatial DG lifespan: v1.0.0



DOI10.5281/zenodo.10126688Zenodo10126688MaRDI QIDQ6681733

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 14 November 2023

Copyright license: No records found.



Description

The Github repository contains a variety of scripts that can be run on the SpatialExperiment object e.g., for quality control, unsupervised spatial clustering, pseudo-bulking data, differential expression, and surveying of gene sets from other publications.Here, we include two SpatialExperiment S4 Class storage (spe) objects. The basic spe object stores the raw counts for all the Visium experiments and metadata. The processed spe object is after quality control, batch correction, data integration, unsupervised spatial clustering, cell-type deconvolution, and also contains the metadata.Also included are compressed files for the raw images of haematoxylin and eosin-stained tissue for each Visium slide.






This page was built for dataset: LieberInstitute/spatial_DG_lifespan: v1.0.0

Retrieved from "https://mardi.schubotz.org/w/index.php?title=LieberInstitute/spatial_DG_lifespan:_v1.0.0&oldid=44869666"
Powered by MediaWiki