AGC archives of human and SARS-CoV-2 genomes

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DOI10.5281/zenodo.7694116Zenodo7694116MaRDI QIDQ6682225

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 2 March 2023

Copyright license: No records found.



Description

AGC is a tool to compress a collection of similar genomes. This Zenodo record provides pre-built AGC-3.0 archives of several datasets: File HPRC-yr1.agc contains CHM13 and 94 haploid human assemblies released by HPRCin 2021. The telomere-to-telomereCHM13 v2pluschrY from GRCh38 is used as the reference genome. File sars-cov-2_ncbi-620k.agc contains 619,750 complete SARS-CoV-2 genomes withNC_045512.2 as the reference. It wascreated with AGC command line agc create -cb10000 -s3000.SARS-CoV-2 genomes were downloaded from NCBI at the end of year 2021. The original FASTA is provided as sars-cov-2_ncbi-620k.fa.xz.






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