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Annotation file (gff3) from the killifish, Fundulus rathbuni (gill epithelium) - MaRDI portal

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Annotation file (gff3) from the killifish, Fundulus rathbuni (gill epithelium)

From MaRDI portal



DOI10.5281/zenodo.2226742Zenodo2226742MaRDI QIDQ6719616

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 14 November 2018

Copyright license: No records found.



Description

Annotation, gff3fileof the reference de novo transcriptome assembly from the killifish, Fundulus rathbunicreated with the dammit pipeline using the Pfam, Rfam, OrthoDB databases in addition to Fundulus heteroclitus amino acids (RefSeq). Fish were acclimated to either brackish or fresh water then exposed to an acute brackish water challenge. Transcriptome data from gill epithelium tissue were collected. A reference transcriptome assembly wasgenerated from all individuals then used to analyze transcriptional responses to salinity.






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