Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372
CATH-KinFams: CATH Protein Kinase classification alignments and Hidden Markov Models - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

CATH-KinFams: CATH Protein Kinase classification alignments and Hidden Markov Models

From MaRDI portal



DOI10.5281/zenodo.7575924Zenodo7575924MaRDI QIDQ6720429

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 11 January 2023

Copyright license: No records found.



Description

CATH KinFams are protein kinase domain families classified according to functional similarity based on SDP. In this deposition we make available 2,210 KinFams sequence alignments alongside Hidden Markov Models built from them to be used with HMMER3. A concatenated library kinases_4.3-FF-seed.hmm is also available to scan against the whole KinFams dataset. The Zenodo deposition contains: kinfams-cath-4.3-seed-alignments.tar.gz - KinFams FASTA file alignments with headers UniProt_ID/start-stop i.e. A8XMX4/281-587 kinfams-cath-4.3-seed-hmms.tar.gz - HMMs for each individual KinFam and concatenated in a HMM library. kinfams-cath-4.3-seed-mda-strings - Multi-Domain-Architecture string assignment for each sequence in the KinFams dataset. human_kinfams_af2_models_cif.tar.gz - Chopped mmCIF files containing Human Kinases AlphaFold2 Models.






This page was built for dataset: CATH-KinFams: CATH Protein Kinase classification alignments and Hidden Markov Models

Retrieved from "https://mardi.schubotz.org/w/index.php?title=CATH-KinFams:_CATH_Protein_Kinase_classification_alignments_and_Hidden_Markov_Models&oldid=44838241"
Powered by MediaWiki