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CATH Structural domains in AlphaFold2 models for 21 model organisms - MaRDI portal

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CATH Structural domains in AlphaFold2 models for 21 model organisms

From MaRDI portal



DOI10.5281/zenodo.7404988Zenodo7404988MaRDI QIDQ6718879

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 13 July 2022

Copyright license: No records found.



Description

CATH structural domain assignments for AlphaFold2 models in 21 model organisms. The tablecath-v4_3_0.alphafold-v2.2022-11-22.tsv contains the domain assignments with information on model quality, CATH superfamily and Class, organism, average pLDDT, percentage of residues not in secondary structure, globularity and domain origin (CATH-PDB, CATH-HMM,Pfam,newfams). Organisms included: Arabidopsis thaliana Caenorhabditis elegans Candida albicans Danio rerio Dictyostelium discoideum Drosophila melanogaster Escherichia coli Glycine max Homo sapiens Leishmania infantum Methanocaldococcus jannaschii Mus musculus Mycobacterium tuberculosis Oryza sativa Plasmodium falciparum Rattus norvegicus Saccharomyces cerevisiae Schizosaccharomyces pombe Staphylococcus aureus Trypanosoma cruzi Zea mays The archive cath-v4_3_0.alphafold-v2.2022-11-22.by_superfamily.tgz contains all domains assigned by CATH in the dataset as PDB files, divided by superfamily. Alternatively, if youre interested in a particular organism, an individual tarball containing all CATH domains as PDB files is available e.g. cath-v4_3_0.alphafold-v2.2022-11-22.arabidopsis_thaliana.tgz All domains included in this release are named as af_[UniProt_ID]_[start]_[stop].






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