msproteomics sitereport: reporting DIA-MS phosphoproteomics experiments at site level with ease

DOI10.5281/ZENODO.11494771Zenodo11494771MaRDI QIDQ6673546

Dataset published at Zenodo repository.

Thang Pham

Publication date: 29 June 2024

Copyright license: Creative Commons Attribution 4.0 International

Description

Data associated with the paper Pham TV, Henneman AA, Truong NX, Jimenez CR, msproteomics sitereport: reporting DIA-MS phosphoproteomics experiments at site level with ease, Bioinformatics, 2024;btae432, https://doi.org/10.1093/bioinformatics/btae432 olsen-directDIA-SN.sne - Spectronaut 18 search of the Olsen dataset. PXD014525-sn-18-olsen.zip - text export of olsen-directDIA-SN.sne 20220530_113551_Phospho_optimal_dia-PASEF_21min_v16_Report.zip - Spectronaut 16 output of the data in PXD034128 Phospho_EGF_diAID.zip - DIA-NN 1.8 output of the data in PXD034128 PXD034128-diann-1.8.2-beta27.zip - DIA-NN 1.8.1 search of the data in PXD034128 20231106_133349_optimal4.sne - Spectronaut 18 search of the data in PXD034128 PXD034128-sn-18.zip - text export of 20231106_133349_optimal4.sne uniprot-reviewed_yes_AND_organism__Homo_sapiens__Human___9606___--.zip - protein sequences ptm.rs - Spectronaut report export scheme

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