GENCODE mouse & human transcript to gene files for txImport

DOI10.5281/zenodo.1324497Zenodo1324497MaRDI QIDQ6675828

Dataset published at Zenodo repository.

Stephen D. Turner

Publication date: 1 August 2018

Copyright license: Creative Commons Attribution 4.0 International

Description

GENCODE data downloaded for human (GRCh38p12 v28)and mouse (GRCm38p6 vM18). For each organism (human=v28, mouse=vM18), there is an R script with the commands necessary to generate the tx2gene CSV that can be read in and used with the tximport Bioconductor package for summarizing transcript abundances to the gene level. gencode.v28 = human gencode.vM18 = mouse

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