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Data and Code for High Throughput FTIR Analysis of Macro and Microplastics with Plate Readers - MaRDI portal

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Data and Code for High Throughput FTIR Analysis of Macro and Microplastics with Plate Readers

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(Redirected from Dataset:6681298)



DOI10.5281/zenodo.10126851Zenodo10126851MaRDI QIDQ6681298

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 14 November 2023



Description

Data and source code for reproducing the analysis conducted in "High Throughput FTIR Analysis of Macro and Microplastics with Plate Readers"All materials are licensed for noncommercial purposeshttps://creativecommons.org/licenses/by-nc/4.0/Explanatory_Videos.zip has videos showing data collection methods.HIDA_Publication.R has source code for doing data cleanup and analysis on data in database.zip.databasedata.zip holds all raw and analyzed data.- ATR, Reflectance, and Transmissionfolders has all data used in the manuscript. In a raw (.0) and combined (export.csv) format for each of the plates analyzed (folder numbers).- Plots folder has images of each spectrum.- cell_information.csv has the raw ids and comments made at the time the particles were assessed.- classes_reference_2.csv has the transformations used to standardize open specy's terms to polymer classes.- CleanedSpectra_raw.csv has the total cleaned up database of all spectral intensities in long format.- joined_cell_metadata.csv has the metadata for each plate well analyzed.- library_metadata.csv has metadata for each spectrum in raw form for each particle id.- Lisa_Plate_6.csv has the metadata from Lisa Roscher used in this study.- Metadata_raw.csv has the conformed metadata that can be paired with the CleanedSpectra_raw.csv file.- OpenSpecy_Classification_Baseline.csv has the particle metadata combined with Open Specy's classes identified after baseline correcting and smoothing the spectra with the standard Open Specy routine.- OpenSpecy_Classification_Raw.csv has the particle metadata combined with Open Specy's identified classes if using the raw spectra.- particle_spectrum_match.csv converts particle ids to their reference in the Polymer_Material_Database_AWI_V2_Win.xlsx file.-Polymer_Material_Database_AWI_V2_Win.xlsx metadata on materials from Primpke's database.- polymer_metadata_2.csv can be used to crosswalk polymer categories to more or less specific terminology.- spread_os.csv is the reference database used in CleanedSpectra_raw.csv that has been spread to wide format.- Top Correlation Data20221201-125621.csv is a download of results from Open Specy's beta tool that provides the top ids from the reference database.






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