Taxon sampling and inferred community phylogenies: R replication code and data.

DOI10.5281/zenodo.1173341Zenodo1173341MaRDI QIDQ6689927

Dataset published at Zenodo repository.

Daniel S. Park, Steven Worthington, Xi Zhenxiang

Publication date: 11 December 2017

Copyright license: Creative Commons Attribution 4.0 International

Description

1 ) Code for simulating community phylogenies: community_simulations_creation.R [taxon].gene [taxon].phy [taxon].RAxML_bestTree.tre [taxon].Simulate.A.Community.pl [taxon].Simulate.B.Community.pl [taxon].Simulate.C.Community.pl [taxon].Simulate.D.Community.pl 2) R code for creating and comparing phylogenetic diversity metrics: simulated_metric_calculation_and_comparison.R empirical_metric_calculation_and_comparison.R 3) R code and data for statistical analyses: simulated_data_analysis.R empirical_data_analysis.R simulated_interval_individual_lme_data.csv simulated_summary_interval_individual_lme_data.csv empirical_interval_individual_lme_data.csv empirical_summary_interval_lme_data.csv

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