Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Notice: Unexpected clearActionName after getActionName already called in /var/www/html/w/includes/Context/RequestContext.php on line 321
Scripts reproducing the analyses of the paper "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells" by Costa et al - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of MediaWiki\Skin\BaseTemplate::getPersonalTools was deprecated in 1.46 Call $this->getSkin()->getPersonalToolsForMakeListItem instead (T422975). [Called from Skins\Chameleon\Components\NavbarHorizontal\PersonalTools::getHtml in /var/www/html/w/skins/chameleon/src/Components/NavbarHorizontal/PersonalTools.php at line 66] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Scripts reproducing the analyses of the paper "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells" by Costa et al

From MaRDI portal
(Redirected from Dataset:6690180)



DOI10.5281/zenodo.10404879Zenodo10404879MaRDI QIDQ6690180

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 19 December 2023



Description

This is the code to reproduce the data analyses in the manuscript "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells". Required software and packages: R (4.2.1)circlize (0.4.15)ComplexHeatmap (2.12.1)cowplot (1.1.1)future (1.28.0)ggalluvial (0.12.5)ggpubr (0.4.0)ggrepel (0.9.1)GSVA (1.44.5)msigdbr (7.5.1)patchwork (1.1.2)plyr (1.8.7)presto (1.0.0)RColorBrewer (1.1-3)reshape2 (1.4.4)sctransform (0.3.5)Seurat (4.2.0)SeuratDisk (0.0.0.9020)SeuratWrappers (0.3.1)velocyto.R (0.6) Howto:Execute all scripts in order by first changing into the directory, and then executing the script: cd 00_QC; Rscript 00_QC.R; cd ..






This page was built for dataset: Scripts reproducing the analyses of the paper "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells" by Costa et al

Retrieved from "https://mardi.schubotz.org/w/index.php?title=Scripts_reproducing_the_analyses_of_the_paper_%22HCMV_exploits_STING_signaling_and_counteracts_IFN_and_ISG_induction_to_facilitate_infection_of_dendritic_cells%22_by_Costa_et_al&oldid=44854885"
Powered by MediaWiki