Data set for "Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior"
DOI10.5281/zenodo.1063898Zenodo1063898MaRDI QIDQ6705368
Dataset published at Zenodo repository.
Eloïse Charrière, Carl C. H. Petersen, Pierre le Merre, Vahid Esmaeili, Paul Salin, Sylvain Crochet, Katia Galan
Publication date: 14 December 2017
Copyright license: Creative Commons Attribution 4.0 International
Data set for: Le Merre P, Esmaeili V, Charrire E, Galan K, Salin P-A, Petersen CCH, Crochet S (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron, https://doi.org/10.1016/j.neuron.2017.11.031 There are 44 files in this data upload: 1. 2018_LeMerre_Neuron.pdf - this is a pdf version of the online publication. 2. Chronic_LFP_data.mat - this is a Matlab data structure, which contains all the chronic LFP data for the publication. 3. Silicon_Probe_data.mat - this is a Matlab data structure, which contains all the mPFC silicon probe recording data for the publication. 4. Opto_Inactivation_data.mat - this is a Matlab data structure, which contains all the optogenetic inactivation data for the publication. 5. Mus_Inactivation_data.mat - this is a Matlab data structure, which contains all the pharmacological (Muscimol) inactivation data for the publication. 6. Learning_Days_Mtrx.mat - this is a Matlab data file, which contains the selected training days analyzed for the Trained condition in the Detection Task. 7. Exposed_Days_Mtrx.mat - this is a Matlab data file, which contains the selected days analyzed for the Exposed condition in the Neutral Exposure. 8. p_value_colormap.mat - this is a Matlab data file, which contains the color map used to display the p value in the Matlab codes plot_fig2A_SEP_D1_vs_Trained.m; plot_fig2B_Amplitude_D1_vs_Trained.m; plot_fig3A_SEP_D1_vs_Exposed.m; plot_fig4A_SEP_H_vs_M.m. 9. p_value_colormap2.mat - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m; plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m. 10. scatterplot_colormap.mat - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code plot_fig2C_Scatterplot_Amplitude_vs_dprime.m. 11. SEP_colormtrx.mat - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code plot_fig1B_Sensory_Evoked_Potentials.m; plot_figS3A_SEP_EMG_amplitude_ReactionTime.m. 12. zscore_colormap.mat - this is a Matlab data file, which contains the color map used to display the p value in the Matlab code plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m; plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m. 13. Chronic_LFP_dataViewer.fig - this is a Matlab Figure file, which is the GUI layout for Chronic_LFP_dataViewer.m. 14. Chronic_LFP_dataViewer.m - this is a Matlab code, which displays the data contained in Chronic_LFP_data.mat. 15. Silicon_Probe_dataViewer.fig - this is a Matlab Figure file, which is the GUI layout for Silicon_Probe_dataViewer.m. 16. Silicon_Probe_dataViewer.m - this is a Matlab code, which displays the data contained in Silicon_Probe_data.mat. 17. plot_fig1B_Sensory_Evoked_Potentials.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results published in figure 1, panel B (Le Merre et al., 2018). 18. plot_fig1C_Silicon_Probe_Hit_trials.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure 1, panel C (Le Merre et al., 2018). 19. plot_fig2A_SEP_D1_vs_Trained.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 2, panel A (Le Merre et al., 2018). 20. plot_fig2B_Amplitude_D1_vs_Trained.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 2, panel B (Le Merre et al., 2018). 21. plot_fig2C_Scatterplot_Amplitude_vs_dprime.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 2, panel C (Le Merre et al., 2018). 22. plot_fig3A_SEP_D1_vs_Exposed.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 3, panel A (Le Merre et al., 2018). 23. plot_fig3B_Amplitude_D1_vs_Exposed.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 3, panel B (Le Merre et al., 2018). 24. plot_fig3C_ROC_Trained_vs_Exposed.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018). 25. plot_fig3C_ROC_Randomization.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the label shuffled ROCs in the same way as the published figure 3, panel C (Le Merre et al., 2018). 26. plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure 3, panel D (Le Merre et al., 2018). 27. plot_fig4A_SEP_H_vs_M.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 4, panel A (Le Merre et al., 2018). 28. plot_fig4B_Amplitude_ H_vs_M.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure 4, panel B (Le Merre et al., 2018). 29. plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure 4, panel C, left panel (Le Merre et al., 2018). 30. plot_fig4C_Scatterplot_modulation_Hit_vs_Miss.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure 4, panel C, right panel (Le Merre et al., 2018). 31. plot_fig4D_Photoinhibitions.m - this is a Matlab code, which analyses the data in Opto_Inactivation_data.mat, and displays the results published in figure 4, panel D (Le Merre et al., 2018). 32. plot_figS2D_Performance_DetectionTask_NeutralExposition.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure S2, panel D (Le Merre et al., 2018). 33. plot_figS3A_SEP_EMG_amplitude_ReactionTime.m - this is a Matlab code, which analyses the data in Chronic_LFP_data.mat, and displays the results in the same way as the published figure S3, panel A (Le Merre et al., 2018). 34. plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure S3, panel B (Le Merre et al., 2018). 35. plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m - this is a Matlab code, which analyses the data in Silicon_Probe_data.mat, and displays the results in the same way as the published figure S4, panel A (Le Merre et al., 2018). 36. plot_figS4B_Pharmacological_Inactivations.m - this is a Matlab code, which analyses the data in Mus_Inactivation_data.mat, and displays the results published in figure S4 (Le Merre et al., 2018). 37. Load_LFP_Multisite_database.m - this is a Matlab code, which is called in the Matlab codes that analyze the data in Chronic_LFP_data.mat. 38. Load_Silicon_Probe_database.m - this is a Matlab code, which is called in the Matlab codes that analyze the data in Silicon_Probe_data.mat. 39. Load_Optogenetic_Inactivation_database.m - this is a Matlab code, which is called in the Matlab code that analyzes the data in Opto_Inactivation_data.mat. 40. Load_Pharmacological_Inactivation_database.m - this is a Matlab code, which is called in the Matlab code that analyzes the data in Mus_Inactivation_data.mat. 41. bonf_holm.m - this is a Matlab code developed by D. M. Groppe, which is called in the Matlab code plot_figS4B_Pharmacological_Inactivations.m: https://ch.mathworks.com/matlabcentral/fileexchange/28303-bonferroni-holm-correction-for-multiple-comparisons 42. boundedline.m - this is a Matlab code developed by K. Kearney, which is called in the Matlab codes plot_fig1C_Silicon_Probe_Hit_trials.m; plot_fig2A_SEP_D1_vs_Trained.m; plot_fig3A_SEP_D1_vs_Exposed.m; plot_fig3C_ROC_Trained_vs_Exposed.m; plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m; plot_fig4A_SEP_H_vs_M.m; plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m; plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m; plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m: https://ch.mathworks.com/matlabcentral/fileexchange/27485-boundedline-m 43. inpaint_nans.m - this is a Matlab code, which is called in the Matlab code boundedline.m. 44. PSTH_Simple.m - this is a Matlab code developed by V. Esmaeili, which is called in the Matlab codes plot_fig1C_Silicon_Probe_Hit_trials.m; plot_fig3D_mPFC_PSTH_and_zscore_DT_vs_NE.m; plot_fig4C_mPFC_PSTH_Hit_vs_Miss.m; plot_figS3B_Stim_vs_Catch_for_significantly_inc_dec_units.m; plot_figS4A_H_vs_M_for_inc_dec_units_and_zscored_PSTH.m.
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