Data set for "Anatomically and functionally distinct thalamocortical inputs to primary and secondary mouse whisker somatosensory cortices"
DOI10.5281/zenodo.3824359Zenodo3824359MaRDI QIDQ6705403
Dataset published at Zenodo repository.
Carl C. H. Petersen, Ofer Yizhar, Georgios Foustoukos, Tess B. Oram, B. Semihcan Sermet, Sami El-Boustani
Publication date: 3 July 2020
Copyright license: Creative Commons Attribution 4.0 International
Data set for: El-Boustani S, Sermet BS, Foustoukos G, Oram TB, Yizhar O, Petersen CCH (2020) Anatomically and functionally distinct thalamocortical inputs to primary and secondary mouse whisker somatosensory cortices. Nature Communications 11: 3342. doi: 10.1038/s41467-020-17087-7 There are 4 files in this upload: 1. The file named 2020_El-Boustani_NCOMMS.pdf is the Open Access pdf file of the manuscript published in Nature Communications. 2. The file named 2020_El-Boustani_NCOMMS_SupMovie1.avi is Supplementary Movie 1 in .avi format, accompanying the Nature Communications publication. 2. The file named 2020_El-Boustani_NCOMMS_SupMovie2.avi is Supplementary Movie 2 in .avi format, accompanying the Nature Communications publication. 4. The file named El-Boustani_data_code.zip (~36 GB) is a zipped version of a folder El-Boustani_data_code (~45 GB), which contains the data analysed in the study along with the Matlab code used to generate the published figures. To access the data and the code, first unzip the file. In the main folder, data for all experiments are stored within folders starting by the prefix SB. The code for generating population data and plotting figures from the paper are in the folder Matlab_code. In this folder, several Matlab scripts are named after the panels or figures they will plot such as Plot_Fig3d_Axon_GCaMP6s_traces_example.m. After opening each file, executing the script will automatically plot the panels and name them accordingly. In some files, the type of data to plot should be specified at the very beginning of the script: VPM for VPM data, POMf for POm-FO data and Layer1 for POm-HO data in layer 1. For figure 2, the code is located in a dedicated folder where a Matlab file Plot_Fig2d_g_Populatin_Plot_POm_FO_HO.m is used to generate the figures. Finally, other Matlab files are included that are used to create population .mat files or for additional analysis related to the manuscript.
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