Training Images for "ImmuNet" Convolutional Neural Network

DOI10.5281/zenodo.8084976Zenodo8084976MaRDI QIDQ6707949

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 2 November 2021

Copyright license: No records found.

Description

This dataset contains annotations and annotated images for the AgarCyto samples used in thismanuscript: A Segmentation-Free Machine Learning Architecture for Immune Land-scape Phenotyping in Solid Tumors by Multichannel Imaging. ShabazSultan,Mark A. J.Gorris,Lieke L.van der Woude,FrankaBuytenhuijs,EvgeniaMartynova,Sandravan Wilpe,KiekVerrijp,Carl G.Figdor,I. Jolanda M.de Vries,JohannesTextor bioRxiv2021.10.22.464548;doi:https://doi.org/10.1101/2021.10.22.464548 The .tar.gz file contains several multichannel images stored as TIFF files, and arranged in a folder structure that is convenient for matching the files to the annotations provided in the .json.gz file.We also provide an .h5 file that contains the final trained network that was used to generate the figures in this manuscript. Further information on the data can be found in the manuscript cited above. Instructions on how to use the annotations and the code can be found on our GitHub page at:https://github.com/jtextor/immunet

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