Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Notice: Unexpected clearActionName after getActionName already called in /var/www/html/w/includes/Context/RequestContext.php on line 321
Phyloseq 16S v3v4 object accompanying paper: Host genotype affects endotoxin release in excreta of broilers at slaughter age - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of MediaWiki\Skin\BaseTemplate::getPersonalTools was deprecated in 1.46 Call $this->getSkin()->getPersonalToolsForMakeListItem instead (T422975). [Called from Skins\Chameleon\Components\NavbarHorizontal\PersonalTools::getHtml in /var/www/html/w/skins/chameleon/src/Components/NavbarHorizontal/PersonalTools.php at line 66] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Phyloseq 16S v3v4 object accompanying paper: Host genotype affects endotoxin release in excreta of broilers at slaughter age

From MaRDI portal
(Redirected from Dataset:6709413)



DOI10.5281/zenodo.7965704Zenodo7965704MaRDI QIDQ6709413

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 24 May 2023

Copyright license: No records found.



Description

This ready to loadphyloseqR S4 object contains the ASV table, taxonomy table and sample metadata. This data was build using the DaDa2 (version 1.18.0) andphyloseq (version 1.34.0) R packages using the SILVA 138.1 nr99 database and raw MiSeq PE300 sequencing data deposited at NCBI-SRA under BioProject: PRJNA975731. F. Marcato, J.M.J. Rebel, S.K. Kar, I. Wouters, D. Schokker, A. Bossers, F. Harders, J.W. van Riel, M. Wolthuis-Fillerup and I.C. de Jong. The main goal of the current study was to investigate whether or not it was possible to modulate the fecal microbiome and thereby reducing endotoxin concentrations in the excreta of broiler chickens. An experiment was carried out with a 2 x 2 x 2 factorial arrangement including 3 factors, 1) genetic strain (fast-growing Ross 308 vs. slower-growing Hubbard JA757), 2) no vs. combined use of probiotics and prebiotics in the diet and drinking water, 3) early feeding at the hatchery vs. non early feeding. A total of 624 Ross 308 and 624 Hubbard JA757 day-old male broiler chickens were included until d 37 and d 51 of age, respectively. Broilers (26 chicks per pen) were housed in a total of 48 pens, and there were 6 replicate pens/treatment group. Pooled cloacal swabs (10 chickens per pen) for microbiome and endotoxin analyses were collected at a target body weight (BW) of 200 g, 1 kg and 2.5 kg.






This page was built for dataset: Phyloseq 16S v3v4 object accompanying paper: Host genotype affects endotoxin release in excreta of broilers at slaughter age

Retrieved from "https://mardi.schubotz.org/w/index.php?title=Phyloseq_16S_v3v4_object_accompanying_paper:_Host_genotype_affects_endotoxin_release_in_excreta_of_broilers_at_slaughter_age&oldid=44845621"
Powered by MediaWiki