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Additional Files for "Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass" - MaRDI portal

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Additional Files for "Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass"

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DOI10.5281/zenodo.7634530Zenodo7634530MaRDI QIDQ6720154

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 13 February 2023

Copyright license: No records found.



Description

This dataset contains additional supporting files referenced by the following publication: Kersten S, Chang J, Huber CD, Voichek Y, Lanz C, Hagmaier T, Lang P, Lutz U, Hirschberg I, Lerchl J, Porri A, Van de Peer Y, Schmid K, Weigel D, Rabanal FA.Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass.Proc Natl Acad Sci USA. Directory structure: Haplotypes_ACCase: this directory contains the two haplotypes (fasta format) inferred by pbaa (https://github.com/PacificBiosciences/pbAA ) for each of the 1,046 individuals for which itwas possible to analyse the ACCase locus. Haplotypes_ALS:his directory contains the two haplotypes (fasta format) inferred by pbaa (https://github.com/PacificBiosciences/pbAA ) for each of the 842 individuals for which itwas possible to analyse the ALS1 locus. Reference_genome:this directory contains the Pacbio CLR+Hi-C based chromosome level assembly (fasta file) of anAlopecurus myosuroidesindividual from the German herbicide-sensitive population DE01087 (Appels Wilde Samen GmbH, Darmstadt). In addition, it includes annotation files (gff format) for transposable elements and protein-coding genes. SNP_matrix: this directory contains the SNP matrix(vcf format) for the population study carried out with ddRAD-sequencingdata.






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