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Assembled transcriptomes of ovary, testis, and brain (male and female) of Amphibolurus muricatus (jacky dragon) generated using Trinity v2.11.0 - MaRDI portal

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Assembled transcriptomes of ovary, testis, and brain (male and female) of Amphibolurus muricatus (jacky dragon) generated using Trinity v2.11.0

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DOI10.5281/zenodo.5523684Zenodo5523684MaRDI QIDQ6723274

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 23 September 2021

Copyright license: No records found.



Description

A. muricatus transcriptome assemblies generated using Trinity v2.11.0(Haas et al. 2013; Grabherr et al. 2011; Henschel et al. 2012) Amphibolurus-muricatus_brain.fa.tar.gz: Combined Trinity assembly of A. muricatus brain (male and female). Amphibolurus-muricatus_combined.fa.tar.gz: Combined Trinity assembly of A. muricatus ovary, testis, and brain (male and female). Amphibolurus-muricatus_female_brain.fa.tar.gz: Trinity assembly of female A. muricatus brain. Amphibolurus-muricatus_male_brain.fa.tar.gz: Trinity assembly of male A. muricatus brain. Amphibolurus-muricatus_ovary.fa.tar.gz: Trinity assembly of A. muricatus ovary. Amphibolurus-muricatus_testis.fa.tar.gz: Trinity assembly of A. muricatus testis. References Grabherr, M.G., B.J. Haas, M. Yassour, J.Z. Levin, D.A. Thompson et al., 2011 Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29 (7):644-652. Haas, B.J., A. Papanicolaou, M. Yassour, M. Grabherr, P.D. Blood et al., 2013 De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8 (8):1494-1512. Henschel, R., M. Lieber, L.-S. Wu, P.M. Nista, B.J. Haas et al., 2012 Trinity RNA-Seq assembler performance optimization, pp. 45 in Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond. Association for Computing Machinery, Chicag, IL, USA.






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