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Easy genomic regions for short-read variant calling - MaRDI portal

Easy genomic regions for short-read variant calling

From MaRDI portal



DOI10.5281/zenodo.14911560Zenodo14911560MaRDI QIDQ6682286

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 22 February 2025

Copyright license: No records found.



Description

Panmask easy regions: pm151a.easy: excluding 151-mers occurring 1.01n times in the pangenome, where n is the number of genomes. pm151b.easy: further excluding low-complexity regions 19bp identified by SDUST They exclude all assembly gaps and non-chromosomal contigs. See panmaskfor details.






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