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GENCODE mouse & human transcript to gene files for txImport - MaRDI portal

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GENCODE mouse & human transcript to gene files for txImport

From MaRDI portal
GENCODE mouse & human transcript to gene files for txImport



DOI10.5281/zenodo.1324497Zenodo1324497MaRDI QIDQ6675828

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 1 August 2018

Copyright license: No records found.



Description

GENCODE data downloaded for human (GRCh38p12 v28)and mouse (GRCm38p6 vM18). For each organism (human=v28, mouse=vM18), there is an R script with the commands necessary to generate the tx2gene CSV that can be read in and used with the tximport Bioconductor package for summarizing transcript abundances to the gene level. gencode.v28 = human gencode.vM18 = mouse






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