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BAMMtools - MaRDI portal

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BAMMtools (Q27203)

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Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
Language Label Description Also known as
English
BAMMtools
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees

    Statements

    instance of
    R package
    0 references
    software version identifier
    2.1.10
    publication date
    15 July 2022
    0 references
    1.0.1
    publication date
    7 March 2014
    0 references
    1.0
    publication date
    5 March 2014
    0 references
    2.0.2
    publication date
    10 July 2014
    0 references
    2.0.4
    publication date
    18 March 2015
    0 references
    2.0.5
    publication date
    23 March 2015
    0 references
    2.0.6
    publication date
    10 September 2015
    0 references
    2.1.0
    publication date
    10 November 2015
    0 references
    2.1.1
    publication date
    3 March 2016
    0 references
    2.1.3
    publication date
    24 May 2016
    0 references
    2.1.4
    publication date
    10 June 2016
    0 references
    2.1.5
    publication date
    3 October 2016
    0 references
    2.1.6
    publication date
    3 February 2017
    0 references
    2.1.7
    publication date
    5 December 2019
    0 references
    2.1.8
    publication date
    18 October 2021
    0 references
    2.1.9
    publication date
    23 April 2022
    0 references
    2.1.11
    publication date
    19 December 2023
    0 references
    programmed in
    R
    0 references
    last update
    19 December 2023
    0 references
    description
    Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.
    0 references
    author
    Dan Rabosky
    0 references
    depends on software
    ape
    0 references
    R
    software version identifier
    ≥ 2.10
    0 references
    imports
    Rcpp
    software version identifier
    ≥ 0.11.0
    0 references
    gplots
    0 references
    methods
    0 references

    Identifiers

    swMATH work ID
    15314
    0 references
    CRAN project
    BAMMtools
    0 references
     
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