cellpypes (Q108147)
From MaRDI portal
 | This is the item page for this Wikibase entity, intended for internal use and editing purposes. Please use this page instead for the normal view: cellpypes |
Cell Type Pipes for Single-Cell RNA Sequencing Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | cellpypes |
Cell Type Pipes for Single-Cell RNA Sequencing Data |
Statements
27 January 2024
0 references
Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features.
0 references
