clustermole (Q130917)
From MaRDI portal
Unbiased Single-Cell Transcriptomic Data Cell Type Identification
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | clustermole |
Unbiased Single-Cell Transcriptomic Data Cell Type Identification |
Statements
8 January 2024
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Assignment of cell type labels to single-cell RNA sequencing (scRNA-seq) clusters is often a time-consuming process that involves manual inspection of the cluster marker genes complemented with a detailed literature search. This is especially challenging when unexpected or poorly described populations are present. The clustermole R package provides methods to query thousands of human and mouse cell identity markers sourced from a variety of databases.
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