Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372
directPA - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of MediaWiki\Skin\BaseTemplate::getPersonalTools was deprecated in 1.46 Call $this->getSkin()->getPersonalToolsForMakeListItem instead (T422975). [Called from Skins\Chameleon\Components\NavbarHorizontal\PersonalTools::getHtml in /var/www/html/w/skins/chameleon/src/Components/NavbarHorizontal/PersonalTools.php at line 66] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

directPA (Q133040)

From MaRDI portal





Direction Analysis for Pathways and Kinases
Language Label Description Also known as
English
directPA
Direction Analysis for Pathways and Kinases

    Statements

    instance of
    R package
    0 references
    software version identifier
    1.5
    publication date
    16 November 2020
    0 references
    1.0
    publication date
    22 October 2013
    0 references
    1.1
    publication date
    20 March 2015
    0 references
    1.2
    publication date
    18 June 2015
    0 references
    1.3
    publication date
    23 March 2016
    0 references
    1.4
    publication date
    7 November 2019
    0 references
    1.5.1
    publication date
    16 November 2023
    0 references
    programmed in
    R
    0 references
    last update
    16 November 2023
    0 references
    maintained by
    Pengyi Yang
    0 references
    description
    Direction analysis is a set of tools designed to identify combinatorial effects of multiple treatments/conditions on pathways and kinases profiled by microarray, RNA-seq, proteomics, or phosphoproteomics data. See Yang P et al (2014) <doi:10.1093/bioinformatics/btt616>; and Yang P et al. (2016) <doi:10.1002/pmic.201600068>.
    0 references
    imports
    grDevices
    0 references
    graphics
    0 references
    stats
    0 references
    plotly
    0 references
    calibrate
    0 references

    Identifiers

    CRAN project
    directPA
    0 references
     
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