PeakSegDP (Q1353443)
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Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | PeakSegDP |
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data |
Statements
24 January 2024
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A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read <http://proceedings.mlr.press/v37/hocking15.html> "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.
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