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pegas (Q20317)

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Population and Evolutionary Genetics Analysis System
Language Label Description Also known as
English
pegas
Population and Evolutionary Genetics Analysis System

    Statements

    instance of
    R package
    0 references
    software version identifier
    1.2
    publication date
    23 February 2023
    0 references
    0.1
    publication date
    13 May 2009
    0 references
    0.2
    publication date
    7 October 2009
    0 references
    0.3-1
    publication date
    19 May 2010
    0 references
    0.3-2
    publication date
    10 June 2010
    0 references
    0.3-3
    publication date
    26 November 2010
    0 references
    0.3-4
    publication date
    1 April 2011
    0 references
    0.3
    publication date
    3 December 2009
    0 references
    0.4-1
    publication date
    19 January 2012
    0 references
    0.4-2
    publication date
    11 May 2012
    0 references
    0.4-3
    publication date
    31 July 2012
    0 references
    0.4-4
    publication date
    23 January 2013
    0 references
    0.4-5
    publication date
    6 June 2013
    0 references
    0.4
    publication date
    23 July 2011
    0 references
    0.5-1
    publication date
    10 January 2014
    0 references
    0.5
    publication date
    8 October 2013
    0 references
    0.6
    publication date
    21 August 2014
    0 references
    0.7
    publication date
    5 March 2015
    0 references
    0.8-1
    publication date
    24 June 2015
    0 references
    0.8-2
    publication date
    25 September 2015
    0 references
    0.8
    publication date
    20 May 2015
    0 references
    0.9
    publication date
    16 April 2016
    0 references
    0.10
    publication date
    3 May 2017
    0 references
    0.11
    publication date
    9 July 2018
    0 references
    0.12
    publication date
    5 October 2019
    0 references
    0.13
    publication date
    10 March 2020
    0 references
    0.14
    publication date
    16 September 2020
    0 references
    1.0-1
    publication date
    17 May 2021
    0 references
    1.0
    publication date
    8 April 2021
    0 references
    1.1
    publication date
    16 December 2021
    0 references
    1.3
    publication date
    13 December 2023
    0 references
    programmed in
    R
    0 references
    last update
    13 December 2023
    0 references
    description
    Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
    0 references
    author
    Emmanuel Paradis
    0 references
    Thibaut Jombart
    0 references
    Zhian N. Kamvar
    0 references
    Brian J. Knaus
    0 references
    Klaus Schliep
    0 references
    Alastair J. Potts
    0 references
    David J. Winter
    0 references
    depends on software
    ape
    software version identifier
    ≥ 5.3-11
    0 references
    R
    software version identifier
    ≥ 3.2.0
    0 references
    imports
    graphics
    0 references
    utils
    0 references
    methods
    0 references

    Identifiers

    swMATH work ID
    8307
    0 references
    CRAN project
    pegas
    0 references
     
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