Linkage maps and genotype data of strawberry produced with skim-sequencing data (Q6683452)

The following set of files contain the results and scripts to produce those results, described in Chapter 5 of the PhD thesis of Alejandro Thrse Navarro, entitled How to map a million markers: linkage mapping of skim-sequencing data in strawberry. In this study, a large dataset of markers produced by whole genome resequecning of a strawberry (Fragariaxananassa) biparental population are used to generate linkage maps. To that end the software Smooth Descentis used, since it is oriented to obtaining linkage maps in usin low quality (error-prone) genotype data. With this methodology we were able to produce a linkage map of 27 out of 28 chromosomes of strawberry which containing 1.85M markers in ~2400 unique genetic mpositions. We also compare this map with a linkage map produced using SNP array data and with the genome sequence assemblyCamarosa.