scoper (Q95984)
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Spectral Clustering-Based Method for Identifying B Cell Clones
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | scoper |
Spectral Clustering-Based Method for Identifying B Cell Clones |
Statements
6 October 2023
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Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) <doi:10.1093/bioinformatics/bty235>. Nouri N and Kleinstein SH (2019) <doi:10.1101/788620>. Gupta NT, et al. (2017) <doi:10.4049/jimmunol.1601850>.
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