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PTXQC - MaRDI portal

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PTXQC (Q28928)

From MaRDI portal
(Redirected from Item:Q96175)





Quality Report Generation for MaxQuant and mzTab Results
Language Label Description Also known as
English
PTXQC
Quality Report Generation for MaxQuant and mzTab Results

    Statements

    instance of
    R package
    0 references
    software version identifier
    1.0.14
    publication date
    20 September 2022
    0 references
    1.0.15
    publication date
    25 April 2023
    0 references
    1.0.16
    publication date
    17 May 2023
    0 references
    0.80.13
    publication date
    11 October 2016
    0 references
    0.80.14
    publication date
    14 October 2016
    0 references
    0.82.2
    publication date
    17 February 2017
    0 references
    0.82.3
    publication date
    3 April 2017
    0 references
    0.82.5
    publication date
    4 May 2017
    0 references
    0.82.6
    publication date
    9 June 2017
    0 references
    0.90.0
    publication date
    5 August 2017
    0 references
    0.91.0
    publication date
    6 October 2017
    0 references
    0.92.0
    publication date
    14 October 2017
    0 references
    0.92.3
    publication date
    7 February 2018
    0 references
    0.92.4
    publication date
    8 February 2019
    0 references
    0.92.5
    publication date
    15 March 2019
    0 references
    0.92.6
    publication date
    16 April 2019
    0 references
    1.0.0
    publication date
    14 January 2020
    0 references
    1.0.1
    publication date
    2 February 2020
    0 references
    1.0.2
    publication date
    11 February 2020
    0 references
    1.0.4
    publication date
    28 March 2020
    0 references
    1.0.5
    publication date
    9 June 2020
    0 references
    1.0.7
    publication date
    12 November 2020
    0 references
    1.0.8
    publication date
    13 December 2020
    0 references
    1.0.9
    publication date
    3 February 2021
    0 references
    1.0.10
    publication date
    2 June 2021
    0 references
    1.0.11
    publication date
    4 October 2021
    0 references
    1.0.12
    publication date
    4 November 2021
    0 references
    1.0.13
    publication date
    22 March 2022
    0 references
    1.0.17
    publication date
    11 July 2023
    0 references
    1.1.0
    publication date
    15 December 2023
    0 references
    programmed in
    R
    0 references
    last update
    15 December 2023
    0 references
    description
    Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
    0 references
    author
    Chris Bielow
    0 references
    imports
    data.table
    0 references
    ggplot2
    software version identifier
    ≥ 2.2
    0 references
    ggdendro
    0 references
    grid
    0 references
    gridExtra
    0 references
    grDevices
    0 references
    gtable
    0 references
    htmlTable
    0 references
    knitr
    software version identifier
    ≥ 1.10
    0 references
    magrittr
    0 references
    methods
    0 references
    plyr
    0 references
    R6
    0 references
    R6P
    0 references
    RColorBrewer
    0 references
    reshape2
    0 references
    rmarkdown
    0 references
    rmzqc
    software version identifier
    ≥ 0.5.0
    0 references
    seqinr
    0 references
    stats
    0 references
    utils
    0 references
    UpSetR
    0 references
    xml2
    0 references
    yaml
    0 references

    Identifiers

    swMATH work ID
    17067
    0 references
    CRAN project
    PTXQC
    0 references
     
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