Library size confounds biology in spatial transcriptomics data

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DOI10.5281/zenodo.10516814Zenodo10516814MaRDI QIDQ6690822

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 31 January 2024

Copyright license: No records found.



Description

This dataset contains annotated sub-cellular localised spatial measurements from the Visium, Xenium and CosMx platforms. Specifically, it includes datasets analysed in the publication Bhuva et. al, 2023 titled Library size confounds biology in spatial transcriptomics data. Raw transcript detections are presented. Data is best accessed through the accompanying SubcellularSpatialData R/Bioconductor package. Region files used to annotate individual transcript detections are presented in the form of GeoJSON files.






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