Anne Shiu

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List of research outcomes

Publication	Date of Publication	Type
Prevalence of Multistationarity and Absolute Concentration Robustness in Reaction Networks	2023-12-18	Paper
Wheels: a new criterion for non-convexity of neural codes	2023-07-12	Paper
Absolute Concentration Robustness and Multistationarity in Reaction Networks: Conditions for Coexistence	2023-07-09	Paper
Deficiency of chemical reaction networks: The effect of operations that preserve multistationarity and periodic orbits	2023-05-30	Paper
Nondegenerate Neural Codes and Obstructions to Closed-Convexity	2023-03-30	Paper
Identifiability of linear compartmental tree models and a general formula for input-output equations	2023-03-09	Paper
Identifiability of linear compartmental models: the effect of moving inputs, outputs, and leaks	2022-10-04	Paper
Neural codes with three maximal codewords: convexity and minimal embedding dimension	2022-08-09	Paper
Absolute concentration robustness in networks with low-dimensional stoichiometric subspace	2022-07-15	Paper
Non-monotonicity of closed convexity in neural codes	2022-05-04	Paper
Identifiability of linear compartmental models: the singular locus	2021-11-19	Paper
Mixed volume of small reaction networks	2021-06-30	Paper
Dynamics of ERK regulation in the processive limit	2021-04-08	Paper
Identifiability of Linear Compartmental Models: The Impact of Removing Leaks and Edges	2021-02-08	Paper
Joining and decomposing reaction networks	2020-05-23	Paper
Neural codes and the factor complex	2020-02-27	Paper
Non-monotonicity of closed convexity in neural codes	2019-12-02	Paper
Oscillations and bistability in a model of ERK regulation	2019-10-22	Paper
Linear Compartmental Models: Input-Output Equations and Operations That Preserve Identifiability	2019-08-26	Paper
Nondegenerate multistationarity in small reaction networks	2019-07-26	Paper
Algebraic signatures of convex and non-convex codes	2019-06-17	Paper
Multistationarity in structured reaction networks	2019-06-12	Paper
Emergence of oscillations in a mixed-mechanism phosphorylation system	2019-06-12	Paper
Revisiting a synthetic intracellular regulatory network that exhibits oscillations	2019-06-06	Paper
Neural Codes, Decidability, and a New Local Obstruction to Convexity	2019-05-08	Paper
Analyzing multistationarity in chemical reaction networks using the determinant optimization method	2019-03-21	Paper
Gröbner bases of neural ideals	2018-07-12	Paper
An all-encompassing global convergence result for processive multisite phosphorylation systems	2017-10-20	Paper
Which Small Reaction Networks Are Multistationary?	2017-06-02	Paper
What Makes a Neural Code Convex?	2017-05-30	Paper
Obstructions to convexity in neural codes	2017-01-16	Paper
Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry	2016-03-04	Paper
A Survey of Methods for Deciding Whether a Reaction Network is Multistationary	2015-11-25	Paper
A global convergence result for processive multisite phosphorylation systems	2015-07-01	Paper
A Geometric Approach to the Global Attractor Conjecture	2014-08-19	Paper
A projection argument for differential inclusions, with applications to persistence of mass-action kinetics	2013-07-04	Paper
Atoms of multistationarity in chemical reaction networks	2013-02-11	Paper
Simplifying the Jacobian Criterion for Precluding Multistationarity in Chemical Reaction Networks	2012-09-12	Paper
Chemical reaction systems with toric steady states	2012-05-14	Paper
The Dynamics of Weakly Reversible Population Processes near Facets	2011-01-17	Paper
Siphons in chemical reaction networks	2010-10-26	Paper
Convex Rank Tests and Semigraphoids	2010-08-27	Paper
Toric dynamical systems	2009-10-09	Paper
The Smallest Multistationary Mass-Preserving Chemical Reaction Network	2009-02-03	Paper
Three Counter-Examples on Semi-Graphoids	2008-07-21	Paper
The Cyclohedron Test for Finding Periodic Genes in Time Course Expression Studies	2008-02-18	Paper
Geometry of rank tests	2006-05-06	Paper

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