Fixed-parameter algorithms for protein similarity search under mRNA structure constraints
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Publication:1002106
DOI10.1016/j.jda.2008.03.004zbMath1154.05326OpenAlexW2060955779MaRDI QIDQ1002106
Guillaume Fertin, Guillaume Blin, Danny Hermelin, Stéphane Vialette
Publication date: 23 February 2009
Published in: Journal of Discrete Algorithms (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jda.2008.03.004
fixed-parameter tractabilityparameterized complexitymRNA optimizationprotein similarityselenocysteine insertion
Analysis of algorithms and problem complexity (68Q25) Graph algorithms (graph-theoretic aspects) (05C85) Genetics and epigenetics (92D10)
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Cites Work
- Unnamed Item
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- Min Cut is NP-complete for edge weighted trees
- Graphs with small bandwidth and cutwidth
- The book thickness of a graph
- On triangulating planar graphs under the four-connectivity constraint
- Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
- Tree-width, path-width, and cutwidth
- Crossing Number is NP-Complete
- Graph minors. II. Algorithmic aspects of tree-width
- Combinatorial Pattern Matching
- Crossing minimization in linear embeddings of graphs
- Cutwidth I: A linear time fixed parameter algorithm
- Cutwidth II: Algorithms for partial w-trees of bounded degree
- SOFSEM 2004: Theory and Practice of Computer Science
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