Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges

DOI10.1016/J.TCS.2008.09.042zbMath1162.68806OpenAlexW2122658384MaRDI QIDQ1004072

Anne Condon, Hosna Jabbari

Publication date: 2 March 2009

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2008.09.042

zbMATH Keywords

RNARNAipseudoknotsecondary structure predictioninteracting RNAs

Mathematics Subject Classification ID

Nonnumerical algorithms (68W05)

Uses Software

• RNAsoft
• CMfinder
• Sfold

Cites Work

• Tree adjoining grammars for RNA structure prediction
• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
• Thermodynamic Analysis of Interacting Nucleic Acid Strands
• Automata, Languages and Programming

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