A practical algorithm based on particle swarm optimization for haplotype reconstruction

DOI10.1016/j.amc.2008.12.040zbMath1156.92030OpenAlexW1996965375MaRDI QIDQ1004420

Jingli Wu, Jianxin Wang, Jian'er Chen

Publication date: 10 March 2009

Published in: Applied Mathematics and Computation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.amc.2008.12.040

zbMATH Keywords

algorithmsingle nucleotide polymorphismsparticle swarm optimizationhaplotypeminimum error correction

Mathematics Subject Classification ID

Approximation methods and heuristics in mathematical programming (90C59) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Related Items

Haplotyping populations by pure parsimony based on compatible genotypes and greedy heuris\-tics, Online optimal decoupled sliding mode control based on moving least squares and particle swarm optimization

Cites Work

• Polynomial and APX-hard cases of the individual haplotyping problem
• Particle swarm optimization for SNP haplotype reconstruction problem
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