Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence

DOI10.1214/08-AOAS212zbMath1160.62091arXiv0906.1094MaRDI QIDQ1018616

Bret Larget, Ruiyan Luo

Publication date: 20 May 2009

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0906.1094

zbMATH Keywords

Markov chain Monte Carlophylogenyamplified fragment length polymorphismstatistical phylogeneticsinsertion and deletion

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Numerical analysis or methods applied to Markov chains (65C40)

Related Items (2)

Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence ⋮ Consistency of a phylogenetic tree maximum likelihood estimator

Uses Software

• MrBayes
• Bali-phy

Cites Work

• Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
• Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
• Inference from iterative simulation using multiple sequences
• Markov chains for exploring posterior distributions. (With discussion)
• A Bayesian Model of AFLP Marker Evolution and Phylogenetic Inference

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