KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks

DOI10.1016/j.camwa.2008.10.086zbMath1165.92011OpenAlexW2138301803MaRDI QIDQ1029896

Thiab R. Taha, Heinz-Bernd Schüttler, Yihai Yu, Jonathan Arnold, Boanerges Aleman-Meza

Publication date: 13 July 2009

Published in: Computers \& Mathematics with Applications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.camwa.2008.10.086

zbMATH Keywords

genetic networkschemical reaction networksrepressilatorsmodel ensemblecomputing life

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items

KINSOLVER

Uses Software

• J3DV
• IntelliGEN
• SCAMP
• GEPASI
• E-CELL
• ODEPACK
• MetaModel
• STOCKS
• MEG
• YSMP
• Virtual Cell
• JigCell

Cites Work

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• Klassische Runge-Kutta-Formeln fünfter und siebenter Ordnung mit Schrittweiten-Kontrolle
• Finding all steady state solutions of chemical kinetic models
• Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations
• Yale sparse matrix package I: The symmetric codes
• J3DV: A Java-based 3D database visualization tool