Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex

DOI10.2140/agt.2009.9.2247zbMath1184.57003arXiv0710.4150OpenAlexW3101625492MaRDI QIDQ1035328

John Luecke, Mariel Vazquez, Isabel K. Darcy

Publication date: 2 November 2009

Published in: Algebraic \& Geometric Topology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0710.4150

zbMATH Keywords

DNA topologygraph planarity3-string tangleDehn Surgerydifference topologyhandle addition lemmaMu transposasetangle methodtetrahedral graphwagon wheel graph

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Related Items (7)

A 4-string tangle analysis of DNA-protein complexes based on difference topology ⋮ The classification of rational subtangle replacements between rational tangles ⋮ Modeling protein-DNA complexes with tangles ⋮ An algebraic view of bacterial genome evolution ⋮ Systems of 3-braid equations ⋮ The local topological free energy of proteins ⋮ Application of a skein relation to difference topology experiments

Uses Software

• TopoICE

Cites Work

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