Sublinear approximate string matching and biological applications

DOI10.1007/BF01185431zbMath0942.68575OpenAlexW2055417893MaRDI QIDQ1336963

W. I. Chang, Eugene L. Lawler

Publication date: 26 February 1996

Published in: Algorithmica (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/bf01185431

Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Nonnumerical algorithms (68W05) Protein sequences, DNA sequences (92D20)

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Cites Work

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• Approximate string matching with suffix automata
• Data structures and algorithms for approximate string matching
• Fast string matching with k differences
• An Improved Algorithm For Approximate String Matching
• An Overview of Sequence Comparison: Time Warps, String Edits, and Macromolecules
• Finding approximate patterns in strings
• Efficient randomized pattern-matching algorithms
• On Finding Lowest Common Ancestors: Simplification and Parallelization
• The Complexity of Pattern Matching for a Random String
• The theory and computation of evolutionary distances: Pattern recognition
• Linear Algorithm for Data Compression via String Matching
• Efficient string matching
• A Space-Economical Suffix Tree Construction Algorithm
• Fast Pattern Matching in Strings
• Fast parallel and serial approximate string matching
• Inferring Evolutionary History From DNA Sequences