Links between maximum likelihood and maximum parsimony under a simple model of site substitution

DOI10.1007/BF02459467zbMath0933.62118OpenAlexW4244797807WikidataQ29393239 ScholiaQ29393239MaRDI QIDQ1363041

Chris Tuffley, Mike A. Steel

Publication date: 29 March 2000

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/bf02459467

zbMATH Keywords

maximum likelihoodphylogenetic treesmaximum parsimony

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

Related Items (17)

Maximum parsimony on subsets of taxa ⋮ On the accuracy of ancestral sequence reconstruction for ultrametric trees with parsimony ⋮ Revisiting an equivalence between maximum parsimony and maximum likelihood methods in phylogenetics ⋮ Statistics for phylogenetic trees ⋮ On the quirks of maximum parsimony and likelihood on phylogenetic networks ⋮ Non-hereditary maximum parsimony trees ⋮ Finding a most parsimonious or likely tree in a network with respect to an alignment ⋮ Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony ⋮ Two further links between MP and ML under the Poisson model. ⋮ Inferring ancestral sequences in taxon-rich phylogenies ⋮ Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent ⋮ The Rise of Statistical Phylogenetics ⋮ On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model ⋮ Most parsimonious likelihood exhibits multiple optima for compatible characters ⋮ Sufficient condition for root reconstruction by parsimony on binary trees with general weights ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation ⋮ Ancestral state reconstruction with large numbers of sequences and edge-length estimation

Cites Work

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• Distributions on bicoloured binary trees arising from the principle of parsimony
• Taxonomy with confidence
• Counting bichromatic evolutionary trees
• On weighted multiway cuts in trees
• Decompositions of leaf-colored binary trees
• Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters

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