A Markov chain model of coalescence with recombination

DOI10.1006/tpbi.1997.1307zbMath0908.92024OpenAlexW2021773601WikidataQ52257964 ScholiaQ52257964MaRDI QIDQ1374051

Katy L. Simonsen, Gary A. Churchill

Publication date: 2 March 1999

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://hdl.handle.net/1813/31986

zbMATH Keywords

Markov chainsstatistical propertiesDNA sequencesrecombination

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Protein sequences, DNA sequences (92D20)

Related Items (7)

The distribution of surviving blocks of an ancestral genome ⋮ Developments in coalescent theory from single loci to chromosomes ⋮ Computing the joint distribution of the total tree length across loci in populations with variable size ⋮ Phase-type distributions in population genetics ⋮ A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning ⋮ A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci ⋮ Markovian approximation to the finite loci coalescent with recombination along multiple sequences

Uses Software

• Maple

Cites Work

• Unnamed Item
• Neutral two-locus multiple allele models with recombination
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination
• Distribution of genome shared IBD by half-sibs: Approximation by the Poisson clumping heuristic
• Properties of a neutral allele model with intragenic recombination

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