Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree

DOI10.1016/S0893-9659(01)80026-4zbMath0999.92028MaRDI QIDQ1600350

Jotun J. Hein, Mike A. Steel

Publication date: 13 June 2002

Published in: Applied Mathematics Letters (Search for Journal in Brave)

zbMATH Keywords

proteinsstochastic modelsinsertion-deletion modelDNA sequence evolution

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of mathematical programming (90C90) Dynamic programming (90C39) Biochemistry, molecular biology (92C40)

Related Items

A sufficient condition for reducing recursions in hidden Markov models ⋮ A sum-over-paths extension of edit distances accounting for all sequence alignments ⋮ A note on probabilistic models over strings: the linear algebra approach ⋮ Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths ⋮ Convergence rate estimation for the TKF91 model of biological sequence length evolution ⋮ Invertibility of the TKF model of sequence evolution ⋮ Algorithm for statistical alignment of two sequences derived from a Poisson sequence length distribution

Cites Work

• Minimal Mutation Trees of Sequences