Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities

DOI10.1016/S0167-9473(02)00008-7zbMath0993.62093OpenAlexW2141733457WikidataQ56879931 ScholiaQ56879931MaRDI QIDQ1608904

T. Pupko, Dan Graur

Publication date: 13 August 2002

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/s0167-9473(02)00008-7

zbMATH Keywords

Chebyshev polynomialsmaximum likelihoodmolecular evolution

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Uses Software

• fastDNAml
• PAML
• ClustalW
• MOLPHY

Cites Work

• A Chemical-Distance-Based Test for Positive Darwinian Selection
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