A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation

DOI10.1007/s11538-018-0494-3zbMath1401.92079OpenAlexW2890736364WikidataQ57157144 ScholiaQ57157144MaRDI QIDQ1617094

Majid jun. Latif, Elebeoba E. May

Publication date: 7 November 2018

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-018-0494-3

zbMATH Keywords

quorum sensingsystems biologybiofilmagent-based modelingEscherichia coli K12

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40) Cell movement (chemotaxis, etc.) (92C17) Systems biology, networks (92C42)

Uses Software

• Matlab
• DAKOTA
• FiPy
• iDynoR
• KEGG
• DFBAlab
• COMSTAT
• COBRA Toolbox

Cites Work

• Monod's bacterial growth model revisited
• Complexity reduction preserving dynamical behavior of biochemical networks
• A methodology for performing global uncertainty and sensitivity analysis in systems biology
• Identifying control mechanisms of granuloma formation during \textit{M. tuberculosis} infection using an agent-based model
• Mathematical Description of Microbial Biofilms