DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment

DOI10.1016/j.physa.2016.03.061zbMath1400.92401OpenAlexW2327883435MaRDI QIDQ1619571

Qian Liu, Xiaoqi Zheng, Yu-Shuang Li

Publication date: 13 November 2018

Published in: Physica A (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.physa.2016.03.061

zbMATH Keywords

sequence alignmentsequence comparisonDNA sequencegraphical representationDUC-curve

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)

Related Items (1)

Phylogenetic analysis of DNA sequences based on fractional Fourier transform

Uses Software

• PSI-BLAST
• BLAST
• DV-Curve

Cites Work

• Graphical and numerical representations of DNA sequences: Statistical aspects of similarity
• Multifractal detrended cross-correlation analysis of coding and non-coding DNA sequences through chaos-game representation
• TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications
• A new graphical coding of DNA sequence and its similarity calculation
• New method for global alignment of 2 DNA sequences by the tree data structure
• Similarity analysis for DNA sequences based on chaos game representation. Case study: the albumin
• A novel representation of DNA sequence based on CMI coding
• A 3D graphical representation of protein sequences based on the Gray code
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• New 3D graphical representation of DNA sequence based on dual nucleotides
• Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications
• Four-component spectral representation of DNA sequences

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