Long range clustering of oligonucleotides containing the CG signal

DOI10.1016/J.JTBI.2009.01.014zbMath1402.92327OpenAlexW2020117831WikidataQ51824890 ScholiaQ51824890MaRDI QIDQ1621077

P. Katsaloulis, Astero Provata, Theoharis Theoharis

Publication date: 8 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.01.014

zbMATH Keywords

long-range correlationspower law distributionsgenome organisationpromoters

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (1)

Long range clustering of oligonucleotides containing the CG signal

Uses Software

• ClustalW
• CpGcluster

Cites Work

• Word frequency and entropy of symbolic sequences: A dynamical perspective
• The ``clustered structure of the purines/pyrimidines distribution in DNA distinguishes systematically between coding and non-coding sequences
• Statistical dynamics of clustering in the genome structure
• Long range clustering of oligonucleotides containing the CG signal
• Understanding long-range correlations in DNA sequences
• Long- and short-range correlations in genome organization
• An Algorithm for Least-Squares Estimation of Nonlinear Parameters
• A method for the solution of certain non-linear problems in least squares
• Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome

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