Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings

DOI10.1016/j.csda.2012.07.026zbMath1471.62188OpenAlexW2019143177MaRDI QIDQ1621334

Magnus Fontes, Charlotte Soneson

Publication date: 8 November 2018

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.csda.2012.07.026

zbMATH Keywords

exchangeabilitybioinformaticsmicroarraygene set ranking

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Uses Software

• KEGG
• GSA

Cites Work

• Shrinkage-based regularization tests for high-dimensional data with application to gene set analysis
• On testing the significance of sets of genes
• Stable feature selection for biomarker discovery
• A framework for list representation, enabling list stabilization through incorporation of gene exchangeabilities
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

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