Nucleotide's bilinear indices: novel bio-macromolecular descriptors for bioinformatics studies of nucleic acids. I: Prediction of paromomycin's affinity constant with HIV-1 \(\Psi\)-RNA packaging region

DOI10.1016/J.JTBI.2009.02.021zbMath1402.92182OpenAlexW2077519370WikidataQ46094693 ScholiaQ46094693MaRDI QIDQ1624332

Francisco Torrens, Gladys Casas Cardoso, Yunaimy Echeverría Díaz, Sadiel E. Ortega-Broche, Yovani Marrero-Ponce, Facundo Pérez-Giménez, Néstor Cubillán, Ysaías J. Alvarado

Publication date: 16 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.02.021

zbMATH Keywords

multiple linear regressionQSPR\textit{TOMOCOMD}-CANAR softwarefootprintingHIV-1 \(\Psi\)-RNA packaging regionnucleic acid and nucleotide bilinear indicesparomomycin

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Uses Software

• ToMoCoMD-CARDD

Cites Work

• Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1
• Novel 2D TOMOCOMD-CARDD molecular descriptors: atom-based stochastic and non-stochastic bilinear indices and their QSPR applications
• 3D-chiral (2.5) atom-based TOMOCOMD-CARDD descriptors: theory and QSAR applications to central chirality codification
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