Full likelihood inference from the site frequency spectrum based on the optimal tree resolution

DOI10.1016/j.tpb.2018.07.002zbMath1405.92183OpenAlexW2951953151WikidataQ90502754 ScholiaQ90502754MaRDI QIDQ1625422

Raazesh Sainudiin, Amandine Véber

Publication date: 29 November 2018

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tpb.2018.07.002

zbMATH Keywords

semi-parametric estimationimportance samplercontrolled Markov process on hidden genealogical treesoptimal tree resolution

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (2)

Developments in coalescent theory from single loci to chromosomes ⋮ Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting

Uses Software

• Apache Spark

Cites Work

• Unnamed Item
• Experiments with the site frequency spectrum
• Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
• Differential evolution -- a simple and efficient heuristic for global optimization over continuous spaces
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Importance Sampling for the Infinite Sites Model
• Computational Inference Beyond Kingman's Coalescent
• Importance sampling on coalescent histories. I

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