Towards optimal distance functions for stochastic substitution models

DOI10.1016/j.jtbi.2009.05.028zbMath1402.92312OpenAlexW1963526042WikidataQ84011098 ScholiaQ84011098MaRDI QIDQ1625881

Irad Yavneh, Ilan Gronau, Shlomo Moran

Publication date: 26 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.05.028

zbMATH Keywords

mean square errorphylogenetic reconstructionevolutionary distancesequence evolutionKimura's 2 parameter modellogdet distance

Mathematics Subject Classification ID

Problems related to evolution (92D15)

Related Items

Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges ⋮ Comparing evolutionary distances via adaptive distance functions ⋮ Lie Markov models

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• The performance of neighbor-joining methods of phylogenetic reconstruction
• Taxonomy with confidence
• Recovering a tree from the leaf colourations it generates under a Markov model
• A few logs suffice to build (almost) all trees (I)
• A discrete Fourier analysis for evolutionary trees.
• Phase transitions in phylogeny

This page was built for publication: Towards optimal distance functions for stochastic substitution models