Structural relatedness via flow networks in protein sequence space

DOI10.1016/J.JTBI.2009.07.004zbMath1405.92215OpenAlexW1987330710WikidataQ51813145 ScholiaQ51813145MaRDI QIDQ1625916

Sagi Snir, Zakharia M. Frenkel, Edward N. Trifonov, Zeev M. Frenkel

Publication date: 26 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.07.004

zbMATH Keywords

network analysisprotein structure predictionprotein sequence analysissequence annotation

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

Uses Software

• Pajek
• Cell-PLoc
• Signal-CF
• Signal-3L
• EzyPred
• MinRMS

Cites Work

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• On implementing the push-relabel method for the maximum flow problem
• Walking through protein sequence space
• A new approach to the maximum-flow problem
• Error Detecting and Error Correcting Codes

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